SSMBS - Motifs Search

<%@page import="java.util.*"%> <%@page import="java.sql.*"%> <%@page import="java.io.*"%> <% String timestamp= String.valueOf(System.currentTimeMillis()); int sect = TheBean.doUpload(request,timestamp); String fileupl = timestamp+".txt"; String t1=timestamp; String fname = "/home/inputfiles/ssm/"+fileupl; String fname1 = "/home/inputfiles/ssm/"+fileupl; response.setContentType("text/html"); int max_seq = TheBean.max_seq(); %> SSMBS - Motifs Search

SSMBS Computing Server
A tool to locate upto five user-defined motifs in a particular order in amino acids and nucleotide sequences.

<% if((type.equals("nucleotide & protein"))||(type.equals("protein & nucleotide"))) { %><% } if(((type.equals("protein"))||(type.equals("nucleotide")))&&(max_seq==0)) { %><% } %>

<% int num_seq = TheBean.num_seq(); if(num_seq==1) { %>Summary of uploaded sequence: <% } else { %>Summary of uploaded sequences: <% } %>
<% String type = TheBean.typereturn(); if(num_seq==1) { %>Type of sequence : <% } else { %>Type of sequences: <% } %>	<% out.print(type); %>
<% if(num_seq>1) { %>Number of sequences:	<% out.print(num_seq+" "); } %>
<% if(num_seq>1) { %> Size of largest sequence:	<% } else { %> Size of sequence:	<% } if(type.equals("protein")) { %><%out.print(max_seq+" residues ");%><% } if(type.equals("nucleotide")) { %><%out.print(max_seq+" nucleotides ");%><% } %>

Motifs Specifications
(Regular Expressions Syntax Rules)