SSMBS Computing Server
A tool to locate upto five user-defined motifs in a particular order in amino acids and nucleotide sequences.
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Select Input Sequence
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Select Database
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<%
String db=((String)request.getParameter("db"));
if(db.equals("gdb"))
{
%>
<%
}
else
{
%>
<%
}
%>
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Select Genome
<%
String organism=((String)request.getParameter("a1"));
File subdir = new File("/data/pub/gdb/GDB_DB/"+organism+"/");
if(subdir.isDirectory())
{
%>
<%
}
else
{
String[] subchildren = subdir.list();
if (subchildren == null)
{
out.print("Not Found");
}
else
{
for (int i=0; i
<%
}
}
%>
<%
}
}
String seq=((String)request.getParameter("a2"));
File smalldir = new File("/data/pub/gdb/GDB_DB/"+organism+"/"+seq+"/");
if(smalldir.isDirectory())
{
%>
<%
}
String sseq=((String)request.getParameter("a3"));
File ssmalldir = new File("/data/pub/gdb/GDB_DB/"+organism+"/"+seq+"/"+sseq+"/");
if(ssmalldir.isDirectory())
{
%>
<%
}
%>
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Motifs Specifications
(Regular Expressions Syntax Rules)
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© DCDS, Indian Institute of Science, Bangalore - 560012, India
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